Human SNP ID | rs3131060 |
---|---|
Human chromosome | chr6 |
Human SNP position | 30795514 |
Pig chromosome | chr7 |
Pig SNP position | 27033536 |
PubMed ID | 25827949 |
---|---|
Journal | Exp Dermatol |
Link | www.ncbi.nlm.nih.gov/pubmed/25827949 |
Study | Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus. |
Disease/Trait | Cutaneous lupus erythematosus |
Initial sample | 151 European ancestry cases, 1,288 European ancestry controls |
Replication sample | 219 European ancestry cases, 262 European ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 30795514 |
Reported gene | FLOT1 |
Mapped gene | LOC105375013 - LINC00243 |
Upstream gene id | 105375013 |
Downstream gene id | 401247 |
SNP gene ids | |
Upstream gene distance | 3936 |
Downstream gene distance | 17352 |
SNP risk allele | rs3131060-A |
SNPs | rs3131060 |
Merged | 0 |
SNP id current | 3131060 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.112 |
P value | 0.0000000000001 |
Pvalue mlog | 13 |
P value text | |
Or beta | 2.3 |
%95 Ci | [1.71-3.11] |
Platform | Affymetrix [906600] |
CNV | N |
Mapped trait | cutaneous lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003834 |
Study accession | GCST002884 |