SNP Detail For rs3131060
1.Mapping Information
Human SNP ID rs3131060
Human chromosome chr6
Human SNP position 30795514
Pig chromosome chr7
Pig SNP position 27033536
2.Annotation Information
PubMed ID25827949
JournalExp Dermatol
Linkwww.ncbi.nlm.nih.gov/pubmed/25827949
StudyGenome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.
Disease/TraitCutaneous lupus erythematosus
Initial sample151 European ancestry cases, 1,288 European ancestry controls
Replication sample219 European ancestry cases, 262 European ancestry controls
Region6p21.33
Chromosome idchr6
Chromosome position30795514
Reported geneFLOT1
Mapped geneLOC105375013 - LINC00243
Upstream gene id105375013
Downstream gene id401247
SNP gene ids
Upstream gene distance3936
Downstream gene distance17352
SNP risk allelers3131060-A
SNPsrs3131060
Merged0
SNP id current3131060
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.112
P value0.0000000000001
Pvalue mlog13
P value text
Or beta2.3
%95 Ci[1.71-3.11]
PlatformAffymetrix [906600]
CNVN
Mapped traitcutaneous lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003834
Study accessionGCST002884