SNP Detail For rs3130614
1.Mapping Information
Human SNP ID rs3130614
Human chromosome chr6
Human SNP position 31508681
Pig chromosome chr7
Pig SNP position 27225178
2.Annotation Information
PubMed ID26291516
JournalGenes Immun
Linkwww.ncbi.nlm.nih.gov/pubmed/26291516
StudyGenome-wide association study identifies HLA 8.1 ancestral haplotype alleles as major genetic risk factors for myositis phenotypes.
Disease/TraitMyositis
Initial sample1,710 European ancestry cases, 4,724 European ancestry controls
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31508681
Reported geneMICB
Mapped geneMICB
Upstream gene id
Downstream gene id
SNP gene ids4277
Upstream gene distance
Downstream gene distance
SNP risk allelers3130614-A
SNPsrs3130614
Merged
SNP id current3130614
Contextintron_variant
Intergenic0
Allele frequencyNR
P value4E-48
Pvalue mlog47.397940008672
P value text
Or beta2.31
%95 Ci[NR]
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitmyositis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000783
Study accessionGCST003092