Human SNP ID | rs3130573 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31138491 |
Pig chromosome | chr7 |
Pig SNP position | 27292334 |
PubMed ID | 21750679 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21750679 |
Study | Genome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis. |
Disease/Trait | Systemic sclerosis |
Initial sample | 564 European ancestry cases, 1,776 European ancestry controls |
Replication sample | 1,682 European ancestry cases, 3,926 European ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31138491 |
Reported gene | PSORS1C1 |
Mapped gene | PSORS1C1, PSORS1C2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 170679, 170680 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3130573-G |
SNPs | rs3130573 |
Merged | 0 |
SNP id current | 3130573 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.0000000006 |
Pvalue mlog | 9.22184874961635 |
P value text | |
Or beta | 1.25 |
%95 Ci | [1.17-1.35] |
Platform | Illumina [489814] |
CNV | N |
Mapped trait | systemic scleroderma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000717 |
Study accession | GCST001146 |