SNP Detail For rs3130573
1.Mapping Information
Human SNP ID rs3130573
Human chromosome chr6
Human SNP position 31138491
Pig chromosome chr7
Pig SNP position 27292334
2.Annotation Information
PubMed ID21750679
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21750679
StudyGenome-wide scan identifies TNIP1, PSORS1C1, and RHOB as novel risk loci for systemic sclerosis.
Disease/TraitSystemic sclerosis
Initial sample564 European ancestry cases, 1,776 European ancestry controls
Replication sample1,682 European ancestry cases, 3,926 European ancestry controls
Region6p21.33
Chromosome idchr6
Chromosome position31138491
Reported genePSORS1C1
Mapped genePSORS1C1, PSORS1C2
Upstream gene id
Downstream gene id
SNP gene ids170679, 170680
Upstream gene distance
Downstream gene distance
SNP risk allelers3130573-G
SNPsrs3130573
Merged0
SNP id current3130573
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.32
P value0.0000000006
Pvalue mlog9.22184874961635
P value text
Or beta1.25
%95 Ci[1.17-1.35]
PlatformIllumina [489814]
CNVN
Mapped traitsystemic scleroderma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000717
Study accessionGCST001146