SNP Detail For rs3129900
1.Mapping Information
Human SNP ID rs3129900
Human chromosome chr6
Human SNP position 32338202
Pig chromosome chr7
Pig SNP position 28322763
2.Annotation Information
PubMed ID20639878
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20639878
StudyA genome-wide study identifies HLA alleles associated with lumiracoxib-related liver injury.
Disease/TraitLumiracoxib-related liver injury
Initial sample31 European ancestry cases, 3 Hispanic cases, 1 case, 176 European, Hispanic and other ancestry controls
Replication sample79 European ancestry cases, 16 Hispanic ancestry cases, 1 case, 405 European, Hispanic and other ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32338202
Reported geneHLA-DRB1
Mapped geneLOC101929163, C6orf10
Upstream gene id
Downstream gene id
SNP gene ids101929163, 10665
Upstream gene distance
Downstream gene distance
SNP risk allelers3129900-?
SNPsrs3129900
Merged0
SNP id current3129900
Contextintron_variant
Intergenic0
Allele frequency0.105
P value7E-25
Pvalue mlog24.1549019599857
P value text
Or beta7.5
%95 Ci[5.0-11.3]
PlatformAffymetrix [682386]
CNVN
Mapped traitdrug-induced liver injury
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004228
Study accessionGCST000735