Human SNP ID | rs3129871 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32438565 |
Pig chromosome | chr7 |
Pig SNP position | 29034883 |
PubMed ID | 23472185 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23472185 |
Study | Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles. |
Disease/Trait | Multiple sclerosis (OCB status) |
Initial sample | 1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases |
Replication sample | 3,029 European ancestry OCB positive cases, 374 European ancestry OCB negative cases |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32438565 |
Reported gene | HLA-DRA |
Mapped gene | BTNL2 - HLA-DRA |
Upstream gene id | 56244 |
Downstream gene id | 3122 |
SNP gene ids | |
Upstream gene distance | 29686 |
Downstream gene distance | 1277 |
SNP risk allele | rs3129871-? |
SNPs | rs3129871 |
Merged | 0 |
SNP id current | 3129871 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000000000000006 |
Pvalue mlog | 14.2218487496163 |
P value text | |
Or beta | 1.72 |
%95 Ci | [1.59-1.86] |
Platform | Illumina [495970] |
CNV | N |
Mapped trait | multiple sclerosis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885 |
Study accession | GCST001891 |
PubMed ID | 23472185 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23472185 |
Study | Oligoclonal band status in Scandinavian multiple sclerosis patients is associated with specific genetic risk alleles. |
Disease/Trait | Multiple sclerosis (OCB status) |
Initial sample | 1,367 European ancestry OCB positive cases, 161 European ancestry OCB negative cases, 428 European ancestry controls |
Replication sample | NA |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32438565 |
Reported gene | HLA-DRA |
Mapped gene | BTNL2 - HLA-DRA |
Upstream gene id | 56244 |
Downstream gene id | 3122 |
SNP gene ids | |
Upstream gene distance | 29686 |
Downstream gene distance | 1277 |
SNP risk allele | rs3129871-? |
SNPs | rs3129871 |
Merged | 0 |
SNP id current | 3129871 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000000000001 |
Pvalue mlog | 16 |
P value text | (OCB positive vs. controls) |
Or beta | 1.98 |
%95 Ci | [1.68-2.32] |
Platform | Illumina [495970] |
CNV | N |
Mapped trait | multiple sclerosis, oligoclonal band measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003885, http://www.ebi.ac.uk/efo/EFO_0005206 |
Study accession | GCST001892 |