Human SNP ID | rs3129763 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32623148 |
Pig chromosome | chr7 |
Pig SNP position | 29147608 |
PubMed ID | 21779181 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21779181 |
Study | Identification of novel genetic markers associated with clinical phenotypes of systemic sclerosis through a genome-wide association strategy. |
Disease/Trait | Systemic sclerosis |
Initial sample | 2,296 European ancestry cases, 5,172 European ancestry controls |
Replication sample | 3,175 European ancestry cases, 4,210 European ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32623148 |
Reported gene | HLA-DRB1, HLA-DQA1 |
Mapped gene | HLA-DRB1 - HLA-DQA1 |
Upstream gene id | 3123 |
Downstream gene id | 3117 |
SNP gene ids | |
Upstream gene distance | 33312 |
Downstream gene distance | 14248 |
SNP risk allele | rs3129763-? |
SNPs | rs3129763 |
Merged | 0 |
SNP id current | 3129763 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.25 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | (ATA positive) |
Or beta | 1.65 |
%95 Ci | [1.42-1.91] |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | systemic scleroderma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000717 |
Study accession | GCST001156 |