Human SNP ID | rs3125734 |
---|---|
Human chromosome | chr10 |
Human SNP position | 62198353 |
Pig chromosome | chr14 |
Pig SNP position | 70775849 |
PubMed ID | 23028356 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23028356 |
Study | Functional variants in NFKBIE and RTKN2 involved in activation of the NF-κB pathway are associated with rheumatoid arthritis in Japanese. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 2,303 Japanese ancestry cases, 3,380 Japanese ancestry controls |
Replication sample | 5,604 Japanese ancestry cases, 31,982 Japanese ancestry controls |
Region | 10q21.2 |
Chromosome id | chr10 |
Chromosome position | 62198353 |
Reported gene | RTKN2 |
Mapped gene | RTKN2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 219790 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3125734-T |
SNPs | rs3125734 |
Merged | 0 |
SNP id current | 3125734 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.108 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.13-1.27] |
Platform | Illumina [NR] |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST001681 |