SNP Detail For rs311904
1.Mapping Information
Human SNP ID rs311904
Human chromosome chr15
Human SNP position 69054606
Pig chromosome chr1
Pig SNP position 184874421
2.Annotation Information
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region15q23
Chromosome idchr15
Chromosome position69054606
Reported geneNOX5
Mapped geneNOX5
Upstream gene id
Downstream gene id
SNP gene ids79400
Upstream gene distance
Downstream gene distance
SNP risk allelers311904-A
SNPsrs311904
Merged0
SNP id current311904
Contextintron_variant
Intergenic0
Allele frequency0.164
P value0.000002
Pvalue mlog5.69897000433601
P value text(Leptin )
Or beta0.03
%95 Ci[NR] ng/mL increase
PlatformIllumina [899892]
CNVN
Mapped traitleptin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005000
Study accessionGCST001762
PubMed ID23251661
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23251661
StudyNovel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
Disease/TraitObesity-related traits
Initial sample815 Hispanic children from 263 families
Replication sampleNA
Region15q23
Chromosome idchr15
Chromosome position69054606
Reported geneNOX5
Mapped geneNOX5
Upstream gene id
Downstream gene id
SNP gene ids79400
Upstream gene distance
Downstream gene distance
SNP risk allelers311904-A
SNPsrs311904
Merged0
SNP id current311904
Contextintron_variant
Intergenic0
Allele frequency0.164
P value0.000002
Pvalue mlog5.69897000433601
P value text(Fat mass )
Or beta0.03
%95 Ci[NR] % increase
PlatformIllumina [899892]
CNVN
Mapped traitbody composition measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005106
Study accessionGCST001762