Human SNP ID | rs3118905 |
---|---|
Human chromosome | chr13 |
Human SNP position | 50531198 |
Pig chromosome | chr11 |
Pig SNP position | 17556594 |
PubMed ID | 20881960 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20881960 |
Study | Hundreds of variants clustered in genomic loci and biological pathways affect human height. |
Disease/Trait | Height |
Initial sample | 133,653 European ancestry individuals |
Replication sample | 50,074 European ancestry individuals |
Region | 13q14.3 |
Chromosome id | chr13 |
Chromosome position | 50531198 |
Reported gene | DLEU7 |
Mapped gene | DLEU1 - DLEU7 |
Upstream gene id | 10301 |
Downstream gene id | 220107 |
SNP gene ids | |
Upstream gene distance | 2555 |
Downstream gene distance | 164352 |
SNP risk allele | rs3118905-A |
SNPs | rs3118905 |
Merged | 0 |
SNP id current | 3118905 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.29 |
P value | 1E-45 |
Pvalue mlog | 45 |
P value text | |
Or beta | 0.056 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [2834208] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000817 |
PubMed ID | 25429064 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25429064 |
Study | Meta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci. |
Disease/Trait | Height |
Initial sample | 36,227 East Asian ancestry individuals |
Replication sample | 57,699 East Asian ancestry individuals |
Region | 13q14.3 |
Chromosome id | chr13 |
Chromosome position | 50531198 |
Reported gene | DLEU7 |
Mapped gene | DLEU1 - DLEU7 |
Upstream gene id | 10301 |
Downstream gene id | 220107 |
SNP gene ids | |
Upstream gene distance | 2555 |
Downstream gene distance | 164352 |
SNP risk allele | rs3118905-A |
SNPs | rs3118905 |
Merged | 0 |
SNP id current | 3118905 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.02 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.1 |
%95 Ci | [0.055-0.145] unit decrease |
Platform | Affymetrix, Illumina [2704730] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002702 |
PubMed ID | 25282103 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25282103 |
Study | Defining the role of common variation in the genomic and biological architecture of adult human height. |
Disease/Trait | Height |
Initial sample | 253,288 European ancestry individuals |
Replication sample | 80,067 European ancestry individuals |
Region | 13q14.3 |
Chromosome id | chr13 |
Chromosome position | 50531198 |
Reported gene | DLEU7 |
Mapped gene | DLEU1 - DLEU7 |
Upstream gene id | 10301 |
Downstream gene id | 220107 |
SNP gene ids | |
Upstream gene distance | 2555 |
Downstream gene distance | 164352 |
SNP risk allele | rs3118905-A |
SNPs | rs3118905 |
Merged | 0 |
SNP id current | 3118905 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.281 |
P value | 1E-69 |
Pvalue mlog | 69 |
P value text | |
Or beta | 0.058 |
%95 Ci | [0.052-0.064] unit decrease |
Platform | Affymetrix, Illumina, Perlegen [2550858] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002647 |