SNP Detail For rs3118905
1.Mapping Information
Human SNP ID rs3118905
Human chromosome chr13
Human SNP position 50531198
Pig chromosome chr11
Pig SNP position 17556594
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region13q14.3
Chromosome idchr13
Chromosome position50531198
Reported geneDLEU7
Mapped geneDLEU1 - DLEU7
Upstream gene id10301
Downstream gene id220107
SNP gene ids
Upstream gene distance2555
Downstream gene distance164352
SNP risk allelers3118905-A
SNPsrs3118905
Merged0
SNP id current3118905
Contextintron_variant
Intergenic1
Allele frequency0.29
P value1E-45
Pvalue mlog45
P value text
Or beta0.056
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817
PubMed ID25429064
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25429064
StudyMeta-analysis of genome-wide association studies of adult height in East Asians identifies 17 novel loci.
Disease/TraitHeight
Initial sample36,227 East Asian ancestry individuals
Replication sample57,699 East Asian ancestry individuals
Region13q14.3
Chromosome idchr13
Chromosome position50531198
Reported geneDLEU7
Mapped geneDLEU1 - DLEU7
Upstream gene id10301
Downstream gene id220107
SNP gene ids
Upstream gene distance2555
Downstream gene distance164352
SNP risk allelers3118905-A
SNPsrs3118905
Merged0
SNP id current3118905
Contextintron_variant
Intergenic1
Allele frequency0.02
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.1
%95 Ci[0.055-0.145] unit decrease
PlatformAffymetrix, Illumina [2704730] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002702
PubMed ID25282103
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25282103
StudyDefining the role of common variation in the genomic and biological architecture of adult human height.
Disease/TraitHeight
Initial sample253,288 European ancestry individuals
Replication sample80,067 European ancestry individuals
Region13q14.3
Chromosome idchr13
Chromosome position50531198
Reported geneDLEU7
Mapped geneDLEU1 - DLEU7
Upstream gene id10301
Downstream gene id220107
SNP gene ids
Upstream gene distance2555
Downstream gene distance164352
SNP risk allelers3118905-A
SNPsrs3118905
Merged0
SNP id current3118905
Contextintron_variant
Intergenic1
Allele frequency0.281
P value1E-69
Pvalue mlog69
P value text
Or beta0.058
%95 Ci[0.052-0.064] unit decrease
PlatformAffymetrix, Illumina, Perlegen [2550858] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST002647