SNP Detail For rs3110643
1.Mapping Information
Human SNP ID rs3110643
Human chromosome chr17
Human SNP position 37713484
Pig chromosome chr12
Pig SNP position 40815399
2.Annotation Information
PubMed ID26154020
JournalNeurobiol Aging
Linkwww.ncbi.nlm.nih.gov/pubmed/26154020
StudyA genome-wide screening and SNPs-to-genes approach to identify novel genetic risk factors associated with frontotemporal dementia.
Disease/TraitFrontotemporal dementia
Initial sample530 European ancestry cases, 926 European ancestry controls
Replication sampleNA
Region17q12
Chromosome idchr17
Chromosome position37713484
Reported geneHNF1B
Mapped geneHNF1B, LOC105371754
Upstream gene id
Downstream gene id
SNP gene ids6928, 105371754
Upstream gene distance
Downstream gene distance
SNP risk allelers3110643-C
SNPsrs3110643
Merged
SNP id current3110643
Contextintron_variant
Intergenic0
Allele frequency0.16
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.65
%95 Ci[1.43-1.87]
PlatformIllumina [2292247] (imputed)
CNVN
Mapped traitFrontotemporal dementia
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_282
Study accessionGCST002960