Human SNP ID | rs3109133 |
---|---|
Human chromosome | chr2 |
Human SNP position | 132545965 |
Pig chromosome | chr15 |
Pig SNP position | 22311397 |
PubMed ID | 25972035 |
---|---|
Journal | J Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25972035 |
Study | Association of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians. |
Disease/Trait | Calcium levels |
Initial sample | 4,558 Korean ancestry individuals |
Replication sample | 4,093 Korean ancestry individuals |
Region | 2q21.2 |
Chromosome id | chr2 |
Chromosome position | 132545965 |
Reported gene | GPR39 |
Mapped gene | GPR39 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2863 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3109133-C |
SNPs | rs3109133 |
Merged | 0 |
SNP id current | 3109133 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.091 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.00315 |
%95 Ci | [0.0019-0.0044] unit decrease |
Platform | Affymetrix [1219546] (imputed) |
CNV | N |
Mapped trait | calcium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004838 |
Study accession | GCST002911 |