SNP Detail For rs3109133
1.Mapping Information
Human SNP ID rs3109133
Human chromosome chr2
Human SNP position 132545965
Pig chromosome chr15
Pig SNP position 22311397
2.Annotation Information
PubMed ID25972035
JournalJ Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25972035
StudyAssociation of common variants in the calcium-sensing receptor gene with serum calcium levels in East Asians.
Disease/TraitCalcium levels
Initial sample4,558 Korean ancestry individuals
Replication sample4,093 Korean ancestry individuals
Region2q21.2
Chromosome idchr2
Chromosome position132545965
Reported geneGPR39
Mapped geneGPR39
Upstream gene id
Downstream gene id
SNP gene ids2863
Upstream gene distance
Downstream gene distance
SNP risk allelers3109133-C
SNPsrs3109133
Merged0
SNP id current3109133
Contextintron_variant
Intergenic0
Allele frequency0.091
P value0.000001
Pvalue mlog6
P value text
Or beta0.00315
%95 Ci[0.0019-0.0044] unit decrease
PlatformAffymetrix [1219546] (imputed)
CNVN
Mapped traitcalcium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004838
Study accessionGCST002911