SNP Detail For rs3108919
1.Mapping Information
Human SNP ID rs3108919
Human chromosome chr8
Human SNP position 100829318
Pig chromosome chr4
Pig SNP position 39022529
2.Annotation Information
PubMed ID19754311
JournalJ Infect Dis
Linkwww.ncbi.nlm.nih.gov/pubmed/19754311
StudyGenomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03).
Disease/TraitAIDS
Initial sample85 European ancestry cases, 2,049 European ancestry controls
Replication sampleNA
Region8q22.3
Chromosome idchr8
Chromosome position100829318
Reported geneintergenic
Mapped geneLOC105375673 - RPS26P6
Upstream gene id105375673
Downstream gene id392256
SNP gene ids
Upstream gene distance83467
Downstream gene distance66422
SNP risk allelers3108919-C
SNPsrs3108919
Merged0
SNP id current3108919
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.27
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta2.13
%95 Ci[1.56-2.91]
PlatformIllumina [291119]
CNVN
Mapped traitAIDS
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000765
Study accessionGCST000487