Human SNP ID | rs3108919 |
---|---|
Human chromosome | chr8 |
Human SNP position | 100829318 |
Pig chromosome | chr4 |
Pig SNP position | 39022529 |
PubMed ID | 19754311 |
---|---|
Journal | J Infect Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/19754311 |
Study | Genomewide association study of a rapid progression cohort identifies new susceptibility alleles for AIDS (ANRS Genomewide Association Study 03). |
Disease/Trait | AIDS |
Initial sample | 85 European ancestry cases, 2,049 European ancestry controls |
Replication sample | NA |
Region | 8q22.3 |
Chromosome id | chr8 |
Chromosome position | 100829318 |
Reported gene | intergenic |
Mapped gene | LOC105375673 - RPS26P6 |
Upstream gene id | 105375673 |
Downstream gene id | 392256 |
SNP gene ids | |
Upstream gene distance | 83467 |
Downstream gene distance | 66422 |
SNP risk allele | rs3108919-C |
SNPs | rs3108919 |
Merged | 0 |
SNP id current | 3108919 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.27 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 2.13 |
%95 Ci | [1.56-2.91] |
Platform | Illumina [291119] |
CNV | N |
Mapped trait | AIDS |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000765 |
Study accession | GCST000487 |