SNP Detail For rs3106136
1.Mapping Information
Human SNP ID rs3106136
Human chromosome chr4
Human SNP position 94232198
Pig chromosome chr8
Pig SNP position 134752110
2.Annotation Information
PubMed ID22864933
JournalCancer
Linkwww.ncbi.nlm.nih.gov/pubmed/22864933
StudyIdentification of novel germline polymorphisms governing capecitabine sensitivity.
Disease/TraitCapecitabine sensitivity
Initial sampleUp to 84 East Asian ancestry lymphoblastoid cell lines, up to 164 European ancestry lymphoblastoid cell lines, up to 173 African ancestry lymphoblastoid cell lines, up to 82 African American lymphoblastoid cell lines
Replication sampleNA
Region4q22.3
Chromosome idchr4
Chromosome position94232198
Reported geneSMARCAD1
Mapped geneSMARCAD1
Upstream gene id
Downstream gene id
SNP gene ids56916
Upstream gene distance
Downstream gene distance
SNP risk allelers3106136-?
SNPsrs3106136
Merged0
SNP id current3106136
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta
%95 Ci
PlatformNR [~ 2000000]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST001368