Human SNP ID | rs310518 |
---|---|
Human chromosome | chr5 |
Human SNP position | 83523300 |
Pig chromosome | chr2 |
Pig SNP position | 93834057 |
PubMed ID | 25194280 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25194280 |
Study | Genome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population. |
Disease/Trait | Laryngeal squamous cell carcinoma |
Initial sample | 993 Chinese ancestry cases, 1,995 Chinese ancestry controls |
Replication sample | 2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 83523300 |
Reported gene | VCAN |
Mapped gene | LOC105379054, VCAN |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105379054, 1462 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs310518-? |
SNPs | rs310518 |
Merged | 0 |
SNP id current | 310518 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.79 |
P value | 0.00000007 |
Pvalue mlog | 7.15490195998574 |
P value text | |
Or beta | 1.27 |
%95 Ci | [1.16-1.37] |
Platform | Affymetrix [662108] |
CNV | N |
Mapped trait | laryngeal squamous cell carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006352 |
Study accession | GCST002597 |