SNP Detail For rs310518
1.Mapping Information
Human SNP ID rs310518
Human chromosome chr5
Human SNP position 83523300
Pig chromosome chr2
Pig SNP position 93834057
2.Annotation Information
PubMed ID25194280
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25194280
StudyGenome-wide association study identifies three susceptibility loci for laryngeal squamous cell carcinoma in the Chinese population.
Disease/TraitLaryngeal squamous cell carcinoma
Initial sample993 Chinese ancestry cases, 1,995 Chinese ancestry controls
Replication sample2,398 Chinese ancestry cases, 2,804 Chinese ancestry controls
Region5q14.3
Chromosome idchr5
Chromosome position83523300
Reported geneVCAN
Mapped geneLOC105379054, VCAN
Upstream gene id
Downstream gene id
SNP gene ids105379054, 1462
Upstream gene distance
Downstream gene distance
SNP risk allelers310518-?
SNPsrs310518
Merged0
SNP id current310518
Contextintron_variant
Intergenic0
Allele frequency0.79
P value0.00000007
Pvalue mlog7.15490195998574
P value text
Or beta1.27
%95 Ci[1.16-1.37]
PlatformAffymetrix [662108]
CNVN
Mapped traitlaryngeal squamous cell carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006352
Study accessionGCST002597