SNP Detail For rs310501
1.Mapping Information
Human SNP ID rs310501
Human chromosome chr5
Human SNP position 83594091
Pig chromosome chr2
Pig SNP position 93906668
2.Annotation Information
PubMed ID20516156
JournalAm J Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20516156
StudyGenome-wide association study of major recurrent depression in the U.K. population.
Disease/TraitMajor depressive disorder
Initial sample1,636 European ancestry cases, 1,594 European ancestry controls
Replication sample1,418 European ancestry cases, 1,918 European ancestry controls
Region5q14.3
Chromosome idchr5
Chromosome position83594091
Reported geneVCAN
Mapped geneVCAN - HAPLN1
Upstream gene id1462
Downstream gene id1404
SNP gene ids
Upstream gene distance11788
Downstream gene distance44107
SNP risk allelers310501-?
SNPsrs310501
Merged0
SNP id current310501
Contextintergenic_variant
Intergenic1
Allele frequency0.33
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.16
%95 Ci[NR]
PlatformIllumina [471747]
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST000689