Human SNP ID | rs310501 |
---|---|
Human chromosome | chr5 |
Human SNP position | 83594091 |
Pig chromosome | chr2 |
Pig SNP position | 93906668 |
PubMed ID | 20516156 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/20516156 |
Study | Genome-wide association study of major recurrent depression in the U.K. population. |
Disease/Trait | Major depressive disorder |
Initial sample | 1,636 European ancestry cases, 1,594 European ancestry controls |
Replication sample | 1,418 European ancestry cases, 1,918 European ancestry controls |
Region | 5q14.3 |
Chromosome id | chr5 |
Chromosome position | 83594091 |
Reported gene | VCAN |
Mapped gene | VCAN - HAPLN1 |
Upstream gene id | 1462 |
Downstream gene id | 1404 |
SNP gene ids | |
Upstream gene distance | 11788 |
Downstream gene distance | 44107 |
SNP risk allele | rs310501-? |
SNPs | rs310501 |
Merged | 0 |
SNP id current | 310501 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.33 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.16 |
%95 Ci | [NR] |
Platform | Illumina [471747] |
CNV | N |
Mapped trait | unipolar depression |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761 |
Study accession | GCST000689 |