Human SNP ID | rs3104964 |
---|---|
Human chromosome | chr8 |
Human SNP position | 95583508 |
Pig chromosome | chr4 |
Pig SNP position | 44327881 |
PubMed ID | 23350875 |
---|---|
Journal | BMC Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/23350875 |
Study | A colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12. |
Disease/Trait | Colorectal cancer |
Initial sample | 882 European ancestry cases, 473 European ancestry controls |
Replication sample | 1,436 European ancestry cases, 1,780 European ancestry controls |
Region | 8q22.1 |
Chromosome id | chr8 |
Chromosome position | 95583508 |
Reported gene | NR |
Mapped gene | C8orf37-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100616530 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3104964-? |
SNPs | rs3104964 |
Merged | 0 |
SNP id current | 3104964 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 1.265 |
%95 Ci | [1.144-1.398] |
Platform | Affymetrix [674718] |
CNV | N |
Mapped trait | colorectal cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005842 |
Study accession | GCST001832 |