SNP Detail For rs3104964
1.Mapping Information
Human SNP ID rs3104964
Human chromosome chr8
Human SNP position 95583508
Pig chromosome chr4
Pig SNP position 44327881
2.Annotation Information
PubMed ID23350875
JournalBMC Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/23350875
StudyA colorectal cancer genome-wide association study in a Spanish cohort identifies two variants associated with colorectal cancer risk at 1p33 and 8p12.
Disease/TraitColorectal cancer
Initial sample882 European ancestry cases, 473 European ancestry controls
Replication sample1,436 European ancestry cases, 1,780 European ancestry controls
Region8q22.1
Chromosome idchr8
Chromosome position95583508
Reported geneNR
Mapped geneC8orf37-AS1
Upstream gene id
Downstream gene id
SNP gene ids100616530
Upstream gene distance
Downstream gene distance
SNP risk allelers3104964-?
SNPsrs3104964
Merged0
SNP id current3104964
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta1.265
%95 Ci[1.144-1.398]
PlatformAffymetrix [674718]
CNVN
Mapped traitcolorectal cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005842
Study accessionGCST001832