SNP Detail For rs310405
1.Mapping Information
Human SNP ID rs310405
Human chromosome chr6
Human SNP position 81090645
Pig chromosome chr1
Pig SNP position 95712568
2.Annotation Information
PubMed ID20881960
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20881960
StudyHundreds of variants clustered in genomic loci and biological pathways affect human height.
Disease/TraitHeight
Initial sample133,653 European ancestry individuals
Replication sample50,074 European ancestry individuals
Region6q14.1
Chromosome idchr6
Chromosome position81090645
Reported geneFAM46A
Mapped geneLOC105377870 - LOC101928742
Upstream gene id105377870
Downstream gene id101928742
SNP gene ids
Upstream gene distance166607
Downstream gene distance400794
SNP risk allelers310405-A
SNPsrs310405
Merged0
SNP id current310405
Contextintergenic_variant
Intergenic1
Allele frequency0.52
P value0.0000000000002
Pvalue mlog12.698970004336
P value text
Or beta0.026
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [2834208] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST000817
PubMed ID23563607
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563607
StudyGenome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
Disease/TraitHeight
Initial sample8,097 European ancestry tall individuals, 8,099 European ancestry short individuals
Replication sample4,872 European ancestry tall individuals, 4,831 European ancestry short individuals
Region6q14.1
Chromosome idchr6
Chromosome position81090645
Reported geneFAM46A
Mapped geneLOC105377870 - LOC101928742
Upstream gene id105377870
Downstream gene id101928742
SNP gene ids
Upstream gene distance166607
Downstream gene distance400794
SNP risk allelers310405-A
SNPsrs310405
Merged0
SNP id current310405
Contextintergenic_variant
Intergenic1
Allele frequency0.52
P value0.0000000001
Pvalue mlog10
P value text
Or beta1.14
%95 Ci[NR]
PlatformAffymetrix, Illumina [~ 2800000] (imputed)
CNVN
Mapped traitbody height
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004339
Study accessionGCST001956