SNP Detail For rs3097847
1.Mapping Information
Human SNP ID rs3097847
Human chromosome chr5
Human SNP position 171470204
Pig chromosome chr16
Pig SNP position 56911984
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region5q35.1
Chromosome idchr5
Chromosome position171470204
Reported geneNR
Mapped geneLOC105377721
Upstream gene id
Downstream gene id
SNP gene ids105377721
Upstream gene distance
Downstream gene distance
SNP risk allelers3097847-?
SNPsrs3097847
Merged
SNP id current3097847
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(EA)
Or beta0.4669
%95 Ci[0.28-0.65] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region5q35.1
Chromosome idchr5
Chromosome position171470204
Reported geneNR
Mapped geneLOC105377721
Upstream gene id
Downstream gene id
SNP gene ids105377721
Upstream gene distance
Downstream gene distance
SNP risk allelers3097847-?
SNPsrs3097847
Merged
SNP id current3097847
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(EA)
Or beta0.3852
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957