SNP Detail For rs3096702
1.Mapping Information
Human SNP ID rs3096702
Human chromosome chr6
Human SNP position 32224554
Pig chromosome chr7
Pig SNP position 28077685
2.Annotation Information
PubMed ID23535732
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535732
StudyIdentification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array.
Disease/TraitProstate cancer
Initial sample11,085 European ancestry cases, 11,463 European ancestry controls
Replication sample19,662 European ancestry cases, 19,715 European ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32224554
Reported geneCYP21A2, DOM3Z, FKBPL, HLA-DRB6, HCG23, LOC10029, ATF6B, LOC100293534, AGER, LOC100507547, MIR1236, PPT2, PPT2-EGF, HLA-DRA, PPT2-EGFL8, RNF5, RNF5P1, CFB, RDBP, TNXA, TNXB, HLA-DQB1, NOTCH4, SKIV2L, STK19, GPSM3, PBX2, LOC10050, EGFL8, AGPAT1, C2, C4A, P
Mapped geneNOTCH4 - LOC101929163
Upstream gene id4855
Downstream gene id101929163
SNP gene ids
Upstream gene distance487
Downstream gene distance31163
SNP risk allelers3096702-A
SNPsrs3096702
Merged0
SNP id current3096702
Contextupstream_gene_variant
Intergenic1
Allele frequency0.4
P value0.000000005
Pvalue mlog8.30102999566398
P value text
Or beta1.07
%95 Ci[1.04-1.10]
PlatformIllumina [~ 2600000] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST001942