Human SNP ID | rs3096702 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32224554 |
Pig chromosome | chr7 |
Pig SNP position | 28077685 |
PubMed ID | 23535732 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23535732 |
Study | Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. |
Disease/Trait | Prostate cancer |
Initial sample | 11,085 European ancestry cases, 11,463 European ancestry controls |
Replication sample | 19,662 European ancestry cases, 19,715 European ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32224554 |
Reported gene | CYP21A2, DOM3Z, FKBPL, HLA-DRB6, HCG23, LOC10029, ATF6B, LOC100293534, AGER, LOC100507547, MIR1236, PPT2, PPT2-EGF, HLA-DRA, PPT2-EGFL8, RNF5, RNF5P1, CFB, RDBP, TNXA, TNXB, HLA-DQB1, NOTCH4, SKIV2L, STK19, GPSM3, PBX2, LOC10050, EGFL8, AGPAT1, C2, C4A, P |
Mapped gene | NOTCH4 - LOC101929163 |
Upstream gene id | 4855 |
Downstream gene id | 101929163 |
SNP gene ids | |
Upstream gene distance | 487 |
Downstream gene distance | 31163 |
SNP risk allele | rs3096702-A |
SNPs | rs3096702 |
Merged | 0 |
SNP id current | 3096702 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.4 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 1.07 |
%95 Ci | [1.04-1.10] |
Platform | Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST001942 |