SNP Detail For rs3094212
1.Mapping Information
Human SNP ID rs3094212
Human chromosome chr6
Human SNP position 31117993
Pig chromosome chr7
Pig SNP position 27310938
2.Annotation Information
PubMed ID20139978
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20139978
StudyGenome-wide association study of hematological and biochemical traits in a Japanese population.
Disease/TraitWhite blood cell count
Initial sample14,677 Japanese ancestry individuals
Replication sampleNA
Region6p21.33
Chromosome idchr6
Chromosome position31117993
Reported genePSORS1C1, CDSN
Mapped geneCDSN, PSORS1C1
Upstream gene id
Downstream gene id
SNP gene ids1041, 170679
Upstream gene distance
Downstream gene distance
SNP risk allelers3094212-C
SNPsrs3094212
Merged0
SNP id current3094212
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.35
P value0.000000007
Pvalue mlog8.15490195998574
P value text
Or beta0.07
%95 Ci[0.046-0.094] unit increase
PlatformIllumina [561583]
CNVN
Mapped traitleukocyte count
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004308
Study accessionGCST000589