Human SNP ID | rs3094188 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31174468 |
Pig chromosome | chr7 |
Pig SNP position | 27258521 |
PubMed ID | 23266558 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/23266558 |
Study | A genome-wide association study identifies 2 susceptibility Loci for Crohn__s disease in a Japanese population. |
Disease/Trait | Crohn__s disease |
Initial sample | 372 Japanese ancestry cases,3,389 Japanese ancestry controls |
Replication sample | Up to 1,151 Japanese ancestry cases, up to 15,800 Japanese ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31174468 |
Reported gene | PSORS1C3 |
Mapped gene | PSORS1C3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100130889 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3094188-C |
SNPs | rs3094188 |
Merged | 0 |
SNP id current | 3094188 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.28 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.61 |
%95 Ci | [1.33-1.94] |
Platform | Illumina [4929034] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001785 |
PubMed ID | 21801394 |
Journal | Orphanet J Rare Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/21801394 |
Study | Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe. |
Disease/Trait | Drug-induced Stevens-Johnson syndrome or toxic epidermal necrolysis (SJS/TEN) |
Initial sample | 424 European ancestry cases, 1,881 European ancestry controls |
Replication sample | NA |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31174468 |
Reported gene | POU5F1 |
Mapped gene | PSORS1C3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100130889 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3094188-A |
SNPs | rs3094188 |
Merged | 0 |
SNP id current | 3094188 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.63 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | |
Or beta | 1.59 |
%95 Ci | [1.34-1.88] |
Platform | Illumina [268914] |
CNV | N |
Mapped trait | Stevens-Johnson syndrome, toxic epidermal necrolysis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004276, http://www.ebi.ac.uk/efo/EFO_0004775 |
Study accession | GCST001181 |