Human SNP ID | rs3094067 |
---|---|
Human chromosome | chr6 |
Human SNP position | 30331468 |
Pig chromosome | chr7 |
Pig SNP position | 26721988 |
PubMed ID | 25827949 |
---|---|
Journal | Exp Dermatol |
Link | www.ncbi.nlm.nih.gov/pubmed/25827949 |
Study | Genome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus. |
Disease/Trait | Cutaneous lupus erythematosus |
Initial sample | 151 European ancestry cases, 1,288 European ancestry controls |
Replication sample | 219 European ancestry cases, 262 European ancestry controls |
Region | 6p22.1 |
Chromosome id | chr6 |
Chromosome position | 30331468 |
Reported gene | TRIM39, RPP21 |
Mapped gene | TRIM39-RPP21, TRIM39 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 202658, 56658 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs3094067-G |
SNPs | rs3094067 |
Merged | 0 |
SNP id current | 3094067 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.096 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 2.32 |
%95 Ci | [1.68-3.20] |
Platform | Affymetrix [906600] |
CNV | N |
Mapped trait | cutaneous lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003834 |
Study accession | GCST002884 |