SNP Detail For rs3094067
1.Mapping Information
Human SNP ID rs3094067
Human chromosome chr6
Human SNP position 30331468
Pig chromosome chr7
Pig SNP position 26721988
2.Annotation Information
PubMed ID25827949
JournalExp Dermatol
Linkwww.ncbi.nlm.nih.gov/pubmed/25827949
StudyGenome-wide association study identifies new susceptibility loci for cutaneous lupus erythematosus.
Disease/TraitCutaneous lupus erythematosus
Initial sample151 European ancestry cases, 1,288 European ancestry controls
Replication sample219 European ancestry cases, 262 European ancestry controls
Region6p22.1
Chromosome idchr6
Chromosome position30331468
Reported geneTRIM39, RPP21
Mapped geneTRIM39-RPP21, TRIM39
Upstream gene id
Downstream gene id
SNP gene ids202658, 56658
Upstream gene distance
Downstream gene distance
SNP risk allelers3094067-G
SNPsrs3094067
Merged0
SNP id current3094067
Contextintron_variant
Intergenic0
Allele frequency0.096
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta2.32
%95 Ci[1.68-3.20]
PlatformAffymetrix [906600]
CNVN
Mapped traitcutaneous lupus erythematosus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003834
Study accessionGCST002884