SNP Detail For rs3091338
1.Mapping Information
Human SNP ID rs3091338
Human chromosome chr5
Human SNP position 132067045
Pig chromosome chr2
Pig SNP position 139699126
2.Annotation Information
PubMed ID22412388
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22412388
StudyA genome-wide scan of Ashkenazi Jewish Crohn__s disease suggests novel susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample737 Ashkenazi Jewish cases, 2,257 Ashkenazi Jewish controls
Replication sample971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls
Region5q31.1
Chromosome idchr5
Chromosome position132067045
Reported geneIL3, ACSL6, P4HA2, PDLIM4, SLC22A4
Mapped geneIL3 - CSF2
Upstream gene id3562
Downstream gene id1437
SNP gene ids
Upstream gene distance3842
Downstream gene distance6747
SNP risk allelers3091338-T
SNPsrs3091338
Merged0
SNP id current3091338
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.328
P value0.00000004
Pvalue mlog7.39794000867203
P value text
Or beta1.23
%95 Ci[1.08-1.42]
PlatformAffymetrix, Illumina [1060934] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST001438