Human SNP ID | rs3091338 |
---|---|
Human chromosome | chr5 |
Human SNP position | 132067045 |
Pig chromosome | chr2 |
Pig SNP position | 139699126 |
PubMed ID | 22412388 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22412388 |
Study | A genome-wide scan of Ashkenazi Jewish Crohn__s disease suggests novel susceptibility loci. |
Disease/Trait | Crohn__s disease |
Initial sample | 737 Ashkenazi Jewish cases, 2,257 Ashkenazi Jewish controls |
Replication sample | 971 Ashkenazi Jewish cases, 2,124 Ashkenazi Jewish controls |
Region | 5q31.1 |
Chromosome id | chr5 |
Chromosome position | 132067045 |
Reported gene | IL3, ACSL6, P4HA2, PDLIM4, SLC22A4 |
Mapped gene | IL3 - CSF2 |
Upstream gene id | 3562 |
Downstream gene id | 1437 |
SNP gene ids | |
Upstream gene distance | 3842 |
Downstream gene distance | 6747 |
SNP risk allele | rs3091338-T |
SNPs | rs3091338 |
Merged | 0 |
SNP id current | 3091338 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.328 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | |
Or beta | 1.23 |
%95 Ci | [1.08-1.42] |
Platform | Affymetrix, Illumina [1060934] (imputed) |
CNV | N |
Mapped trait | Crohn__s disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000384 |
Study accession | GCST001438 |