SNP Detail For rs304172
1.Mapping Information
Human SNP ID rs304172
Human chromosome chr3
Human SNP position 62796793
Pig chromosome chr13
Pig SNP position 48567583
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region3p14.2
Chromosome idchr3
Chromosome position62796793
Reported geneNR
Mapped geneCADPS
Upstream gene id
Downstream gene id
SNP gene ids8618
Upstream gene distance
Downstream gene distance
SNP risk allelers304172-G
SNPsrs304172
Merged0
SNP id current304172
Contextintron_variant
Intergenic0
Allele frequency0.956126387053571
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP36)
Or beta0.3337
%95 Ci[0.19-0.48] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848