SNP Detail For rs30388
1.Mapping Information
Human SNP ID rs30388
Human chromosome chr16
Human SNP position 79580219
Pig chromosome chr6
Pig SNP position 8580038
2.Annotation Information
PubMed ID25461247
JournalPharmacogenet Genomics
Linkwww.ncbi.nlm.nih.gov/pubmed/25461247
StudyGenome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols.
Disease/TraitResponse to abacavir-containing treatment in HIV-1 infection (virologic failure)
Initial sampleUp 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals
Replication sampleNA
Region16q23.2
Chromosome idchr16
Chromosome position79580219
Reported geneNR
Mapped geneMAF
Upstream gene id
Downstream gene id
SNP gene ids4094
Upstream gene distance
Downstream gene distance
SNP risk allelers30388-T
SNPsrs30388
Merged0
SNP id current30388
Contextintergenic_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(phenotype 1)
Or beta2.88
%95 Ci[NR]
PlatformIllumina [> 8000000] (imputed)
CNVN
Mapped traitHIV-1 infection, virologic response measurement, response to abacavir
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006906, http://www.ebi.ac.uk/efo/EFO_0006905
Study accessionGCST002769