Human SNP ID | rs30388 |
---|---|
Human chromosome | chr16 |
Human SNP position | 79580219 |
Pig chromosome | chr6 |
Pig SNP position | 8580038 |
PubMed ID | 25461247 |
---|---|
Journal | Pharmacogenet Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/25461247 |
Study | Genome-wide association study of virologic response with efavirenz-containing or abacavir-containing regimens in AIDS clinical trials group protocols. |
Disease/Trait | Response to abacavir-containing treatment in HIV-1 infection (virologic failure) |
Initial sample | Up 346 European ancestry individuals, Up to 265 Black individuals, Up to 175 Hispanic individuals |
Replication sample | NA |
Region | 16q23.2 |
Chromosome id | chr16 |
Chromosome position | 79580219 |
Reported gene | NR |
Mapped gene | MAF |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 4094 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs30388-T |
SNPs | rs30388 |
Merged | 0 |
SNP id current | 30388 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (phenotype 1) |
Or beta | 2.88 |
%95 Ci | [NR] |
Platform | Illumina [> 8000000] (imputed) |
CNV | N |
Mapped trait | HIV-1 infection, virologic response measurement, response to abacavir |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0006906, http://www.ebi.ac.uk/efo/EFO_0006905 |
Study accession | GCST002769 |