SNP Detail For rs30360
1.Mapping Information
Human SNP ID rs30360
Human chromosome chr5
Human SNP position 56537692
Pig chromosome chr16
Pig SNP position 37863917
2.Annotation Information
PubMed ID24204828
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24204828
StudyGenome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.
Disease/TraitHomeostasis model assessment of insulin resistance (interaction)
Initial sample820 European ancestry individuals
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position56537692
Reported geneLOC441073, MAP3K1
Mapped geneLOC101928448, LOC105378978
Upstream gene id
Downstream gene id
SNP gene ids101928448, 105378978
Upstream gene distance
Downstream gene distance
SNP risk allelers30360-G
SNPsrs30360
Merged0
SNP id current30360
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.293
P value0.000001
Pvalue mlog6
P value text(Carbohydrate)
Or beta
%95 Ci
PlatformAffymetrix [590000]
CNVN
Mapped traitHOMA-IR
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004501
Study accessionGCST002253
PubMed ID24204828
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24204828
StudyGenome-wide contribution of genotype by environment interaction to variation of diabetes-related traits.
Disease/TraitFasting insulin (interaction)
Initial sample820 European ancestry individuals
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position56537692
Reported geneLOC441073, MAP3K1
Mapped geneLOC101928448, LOC105378978
Upstream gene id
Downstream gene id
SNP gene ids101928448, 105378978
Upstream gene distance
Downstream gene distance
SNP risk allelers30360-G
SNPsrs30360
Merged0
SNP id current30360
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.293
P value0.0000009
Pvalue mlog6.04575749056067
P value text(Carbohydrate)
Or beta
%95 Ci
PlatformAffymetrix [590000]
CNVN
Mapped traitfasting blood insulin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004466
Study accessionGCST002248