Human SNP ID | rs30360 |
---|---|
Human chromosome | chr5 |
Human SNP position | 56537692 |
Pig chromosome | chr16 |
Pig SNP position | 37863917 |
PubMed ID | 24204828 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24204828 |
Study | Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. |
Disease/Trait | Homeostasis model assessment of insulin resistance (interaction) |
Initial sample | 820 European ancestry individuals |
Replication sample | NA |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56537692 |
Reported gene | LOC441073, MAP3K1 |
Mapped gene | LOC101928448, LOC105378978 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448, 105378978 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs30360-G |
SNPs | rs30360 |
Merged | 0 |
SNP id current | 30360 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.293 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (Carbohydrate) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [590000] |
CNV | N |
Mapped trait | HOMA-IR |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004501 |
Study accession | GCST002253 |
PubMed ID | 24204828 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24204828 |
Study | Genome-wide contribution of genotype by environment interaction to variation of diabetes-related traits. |
Disease/Trait | Fasting insulin (interaction) |
Initial sample | 820 European ancestry individuals |
Replication sample | NA |
Region | 5q11.2 |
Chromosome id | chr5 |
Chromosome position | 56537692 |
Reported gene | LOC441073, MAP3K1 |
Mapped gene | LOC101928448, LOC105378978 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928448, 105378978 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs30360-G |
SNPs | rs30360 |
Merged | 0 |
SNP id current | 30360 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.293 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (Carbohydrate) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [590000] |
CNV | N |
Mapped trait | fasting blood insulin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004466 |
Study accession | GCST002248 |