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SNP Detail For rs303084
1.Mapping Information
| Human SNP ID | rs303084 |
|---|---|
| Human chromosome | chr4 |
| Human SNP position | 123145793 |
| Pig chromosome | chr8 |
| Pig SNP position | 108287644 |
2.Annotation Information
| PubMed ID | 25673412 |
|---|---|
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
| Study | New genetic loci link adipose and insulin biology to body fat distribution. |
| Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
| Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
| Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
| Region | 4q28.1 |
| Chromosome id | chr4 |
| Chromosome position | 123145793 |
| Reported gene | SPATA5, FGF2 |
| Mapped gene | SPATA5 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 166378 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs303084-A |
| SNPs | rs303084 |
| Merged | 0 |
| SNP id current | 303084 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.7946 |
| P value | 0.0000003 |
| Pvalue mlog | 6.52287874528033 |
| P value text | (EA, women) |
| Or beta | 0.0288 |
| %95 Ci | [0.018-0.04] unit increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
| CNV | N |
| Mapped trait | waist-hip ratio, body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002782 |
| PubMed ID | 25673412 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
| Study | New genetic loci link adipose and insulin biology to body fat distribution. |
| Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
| Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
| Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
| Region | 4q28.1 |
| Chromosome id | chr4 |
| Chromosome position | 123145793 |
| Reported gene | SPATA5, FGF2 |
| Mapped gene | SPATA5 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 166378 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs303084-A |
| SNPs | rs303084 |
| Merged | 0 |
| SNP id current | 303084 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.7961 |
| P value | 0.00000004 |
| Pvalue mlog | 7.39794000867203 |
| P value text | (EA) |
| Or beta | 0.0232 |
| %95 Ci | [0.015-0.031] unit increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
| CNV | N |
| Mapped trait | waist-hip ratio, body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002782 |
| PubMed ID | 25673412 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
| Study | New genetic loci link adipose and insulin biology to body fat distribution. |
| Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
| Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
| Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
| Region | 4q28.1 |
| Chromosome id | chr4 |
| Chromosome position | 123145793 |
| Reported gene | SPATA5, FGF2 |
| Mapped gene | SPATA5 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 166378 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs303084-A |
| SNPs | rs303084 |
| Merged | 0 |
| SNP id current | 303084 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.7682 |
| P value | 0.000005 |
| Pvalue mlog | 5.30102999566398 |
| P value text | (women) |
| Or beta | 0.0249 |
| %95 Ci | [0.014-0.036] unit increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
| CNV | N |
| Mapped trait | waist-hip ratio, body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002782 |
| PubMed ID | 25673412 |
| Journal | Nature |
| Link | www.ncbi.nlm.nih.gov/pubmed/25673412 |
| Study | New genetic loci link adipose and insulin biology to body fat distribution. |
| Disease/Trait | Waist-to-hip ratio adjusted for body mass index |
| Initial sample | up to 56,910 European ancestry men, up to 86,570 European ancestry women |
| Replication sample | up to 36,570 European ancestry men, 30,172 European ancestry women, 915 Filipino ancestry men, 735 Filipino ancestry women, 2,351 African-American/Afro-Caribbean ancestry men, 6,258 African-American/Afro-Caribbean ancestry women, 2,285 South Asian ancestr |
| Region | 4q28.1 |
| Chromosome id | chr4 |
| Chromosome position | 123145793 |
| Reported gene | SPATA5, FGF2 |
| Mapped gene | SPATA5 |
| Upstream gene id | |
| Downstream gene id | |
| SNP gene ids | 166378 |
| Upstream gene distance | |
| Downstream gene distance | |
| SNP risk allele | rs303084-A |
| SNPs | rs303084 |
| Merged | 0 |
| SNP id current | 303084 |
| Context | intron_variant |
| Intergenic | 0 |
| Allele frequency | 0.7701 |
| P value | 0.0000003 |
| Pvalue mlog | 6.52287874528033 |
| P value text | |
| Or beta | 0.0209 |
| %95 Ci | [0.013-0.029] unit increase |
| Platform | Affymetrix, Illumina, Perlegen [up to 2542447] (imputed) |
| CNV | N |
| Mapped trait | waist-hip ratio, body mass index |
| Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004343, http://www.ebi.ac.uk/efo/EFO_0004340 |
| Study accession | GCST002782 |
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