SNP Detail For rs3021304
1.Mapping Information
Human SNP ID rs3021304
Human chromosome chr6
Human SNP position 32607881
Pig chromosome chr7
Pig SNP position 29141035
2.Annotation Information
PubMed ID25108386
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25108386
StudyGenome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3.
Disease/TraitVogt-Koyanagi-Harada syndrome
Initial sample774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls
Replication sample764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls
Region6p21.32
Chromosome idchr6
Chromosome position32607881
Reported geneHLA-DRB1, HLA-DQA1
Mapped geneHLA-DRB1 - HLA-DQA1
Upstream gene id3123
Downstream gene id3117
SNP gene ids
Upstream gene distance18045
Downstream gene distance29515
SNP risk allelers3021304-G
SNPsrs3021304
Merged0
SNP id current3021304
Contextintron_variant
Intergenic1
Allele frequency0.346
P value1E-118
Pvalue mlog118
P value text
Or beta2.97
%95 Ci[2.71-3.26]
PlatformAffymetrix, Illumina [2208258] (imputed)
CNVN
Mapped traitVogt-Koyanagi-Harada disease
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_3437
Study accessionGCST002562