Human SNP ID | rs3021304 |
---|---|
Human chromosome | chr6 |
Human SNP position | 32607881 |
Pig chromosome | chr7 |
Pig SNP position | 29141035 |
PubMed ID | 25108386 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25108386 |
Study | Genome-wide association analysis of Vogt-Koyanagi-Harada syndrome identifies two new susceptibility loci at 1p31.2 and 10q21.3. |
Disease/Trait | Vogt-Koyanagi-Harada syndrome |
Initial sample | 774 Han Chinese ancestry cases, 2,009 Han Chinese ancestry controls |
Replication sample | 764 Han Chinese ancestry cases, 3594 Han Chinese ancestry controls |
Region | 6p21.32 |
Chromosome id | chr6 |
Chromosome position | 32607881 |
Reported gene | HLA-DRB1, HLA-DQA1 |
Mapped gene | HLA-DRB1 - HLA-DQA1 |
Upstream gene id | 3123 |
Downstream gene id | 3117 |
SNP gene ids | |
Upstream gene distance | 18045 |
Downstream gene distance | 29515 |
SNP risk allele | rs3021304-G |
SNPs | rs3021304 |
Merged | 0 |
SNP id current | 3021304 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.346 |
P value | 1E-118 |
Pvalue mlog | 118 |
P value text | |
Or beta | 2.97 |
%95 Ci | [2.71-3.26] |
Platform | Affymetrix, Illumina [2208258] (imputed) |
CNV | N |
Mapped trait | Vogt-Koyanagi-Harada disease |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_3437 |
Study accession | GCST002562 |