SNP Detail For rs30187
1.Mapping Information
Human SNP ID rs30187
Human chromosome chr5
Human SNP position 96788627
Pig chromosome chr2
Pig SNP position 107144709
2.Annotation Information
PubMed ID21743469
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21743469
StudyInteraction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility.
Disease/TraitAnkylosing spondylitis
Initial sample3,023 European ancestry cases, 8,779 European ancestry controls
Replication sample2,111 European ancestry cases, 4,483 European ancestry controls
Region5q15
Chromosome idchr5
Chromosome position96788627
Reported geneERAP1
Mapped geneERAP1
Upstream gene id
Downstream gene id
SNP gene ids51752
Upstream gene distance
Downstream gene distance
SNP risk allelers30187-T
SNPsrs30187
Merged0
SNP id current30187
Contextmissense_variant
Intergenic0
Allele frequency0.33
P value2E-27
Pvalue mlog26.698970004336
P value text
Or beta
%95 Ci
PlatformIllumina [2223620] (imputed)
CNVN
Mapped traitankylosing spondylitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003898
Study accessionGCST001149