Human SNP ID | rs30187 |
---|---|
Human chromosome | chr5 |
Human SNP position | 96788627 |
Pig chromosome | chr2 |
Pig SNP position | 107144709 |
PubMed ID | 21743469 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21743469 |
Study | Interaction between ERAP1 and HLA-B27 in ankylosing spondylitis implicates peptide handling in the mechanism for HLA-B27 in disease susceptibility. |
Disease/Trait | Ankylosing spondylitis |
Initial sample | 3,023 European ancestry cases, 8,779 European ancestry controls |
Replication sample | 2,111 European ancestry cases, 4,483 European ancestry controls |
Region | 5q15 |
Chromosome id | chr5 |
Chromosome position | 96788627 |
Reported gene | ERAP1 |
Mapped gene | ERAP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51752 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs30187-T |
SNPs | rs30187 |
Merged | 0 |
SNP id current | 30187 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.33 |
P value | 2E-27 |
Pvalue mlog | 26.698970004336 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [2223620] (imputed) |
CNV | N |
Mapped trait | ankylosing spondylitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003898 |
Study accession | GCST001149 |