SNP Detail For rs3007243
1.Mapping Information
Human SNP ID rs3007243
Human chromosome chr13
Human SNP position 105154603
Pig chromosome chr11
Pig SNP position 80472839
2.Annotation Information
PubMed ID25188341
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25188341
StudyGenome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias.
Disease/TraitHippocampal sclerosis
Initial sample310 cases, 2,576 controls
Replication sampleNA
Region13q33.2
Chromosome idchr13
Chromosome position105154603
Reported geneintergenic
Mapped geneLOC105370343 - LOC105376683
Upstream gene id105370343
Downstream gene id105376683
SNP gene ids
Upstream gene distance185593
Downstream gene distance70371
SNP risk allelers3007243-G
SNPsrs3007243
Merged0
SNP id current3007243
Contextintergenic_variant
Intergenic1
Allele frequency0.959
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.8386
%95 Ci[0.5-1.18] unit decrease
PlatformAffymetrix, Illumina [NR] (imputed)
CNVN
Mapped traithippocampal sclerosis of aging
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005678
Study accessionGCST002589