Human SNP ID | rs3007243 |
---|---|
Human chromosome | chr13 |
Human SNP position | 105154603 |
Pig chromosome | chr11 |
Pig SNP position | 80472839 |
PubMed ID | 25188341 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25188341 |
Study | Genome-Wide Association Meta-analysis of Neuropathologic Features of Alzheimer__s Disease and Related Dementias. |
Disease/Trait | Hippocampal sclerosis |
Initial sample | 310 cases, 2,576 controls |
Replication sample | NA |
Region | 13q33.2 |
Chromosome id | chr13 |
Chromosome position | 105154603 |
Reported gene | intergenic |
Mapped gene | LOC105370343 - LOC105376683 |
Upstream gene id | 105370343 |
Downstream gene id | 105376683 |
SNP gene ids | |
Upstream gene distance | 185593 |
Downstream gene distance | 70371 |
SNP risk allele | rs3007243-G |
SNPs | rs3007243 |
Merged | 0 |
SNP id current | 3007243 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.959 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.8386 |
%95 Ci | [0.5-1.18] unit decrease |
Platform | Affymetrix, Illumina [NR] (imputed) |
CNV | N |
Mapped trait | hippocampal sclerosis of aging |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005678 |
Study accession | GCST002589 |