Human SNP ID | rs2995264 |
---|---|
Human chromosome | chr10 |
Human SNP position | 103909085 |
Pig chromosome | chr14 |
Pig SNP position | 124756129 |
PubMed ID | 26237428 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26237428 |
Study | Genome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma. |
Disease/Trait | Cutaneous malignant melanoma |
Initial sample | 12,874 European ancestry cases, 23,203 European ancestry controls |
Replication sample | 785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls |
Region | 10q24.33 |
Chromosome id | chr10 |
Chromosome position | 103909085 |
Reported gene | OBFC1, SH3PXD2A |
Mapped gene | OBFC1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 79991 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2995264-G |
SNPs | rs2995264 |
Merged | |
SNP id current | 2995264 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.088 |
P value | 0.000000002 |
Pvalue mlog | 8.69897000433601 |
P value text | |
Or beta | 0.16 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [at least 1569314] (imputed) |
CNV | N |
Mapped trait | cutaneous melanoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000389 |
Study accession | GCST003061 |