SNP Detail For rs2995264
1.Mapping Information
Human SNP ID rs2995264
Human chromosome chr10
Human SNP position 103909085
Pig chromosome chr14
Pig SNP position 124756129
2.Annotation Information
PubMed ID26237428
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26237428
StudyGenome-wide meta-analysis identifies five new susceptibility loci for cutaneous malignant melanoma.
Disease/TraitCutaneous malignant melanoma
Initial sample12,874 European ancestry cases, 23,203 European ancestry controls
Replication sample785 European ancestry cases, 791 European ancestry controls, 2,331 cases, 2,415 controls
Region10q24.33
Chromosome idchr10
Chromosome position103909085
Reported geneOBFC1, SH3PXD2A
Mapped geneOBFC1
Upstream gene id
Downstream gene id
SNP gene ids79991
Upstream gene distance
Downstream gene distance
SNP risk allelers2995264-G
SNPsrs2995264
Merged
SNP id current2995264
Contextintron_variant
Intergenic0
Allele frequency0.088
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta0.16
%95 Ci[NR] unit increase
PlatformAffymetrix, Illumina [at least 1569314] (imputed)
CNVN
Mapped traitcutaneous melanoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000389
Study accessionGCST003061