SNP Detail For rs2986971
1.Mapping Information
Human SNP ID rs2986971
Human chromosome chr10
Human SNP position 29807699
Pig chromosome chr10
Pig SNP position 45538582
2.Annotation Information
PubMed ID20708005
JournalGastroenterology
Linkwww.ncbi.nlm.nih.gov/pubmed/20708005
StudyGenome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
Disease/TraitNon-alcoholic fatty liver disease histology (lobular)
Initial sample236 European ancestry cases
Replication sampleNA
Region10p11.23
Chromosome idchr10
Chromosome position29807699
Reported geneintergenic
Mapped geneLOC105376475 - LOC105376476
Upstream gene id105376475
Downstream gene id105376476
SNP gene ids
Upstream gene distance23660
Downstream gene distance13615
SNP risk allelers2986971-G
SNPsrs2986971
Merged0
SNP id current2986971
Contextregulatory_region_variant
Intergenic1
Allele frequency0.48
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta0.49
%95 Ci[NR] unit increase
PlatformIllumina [324623]
CNVN
Mapped traitnon-alcoholic fatty liver disease, cirrhosis of liver
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422
Study accessionGCST000766