Human SNP ID | rs2986971 |
---|---|
Human chromosome | chr10 |
Human SNP position | 29807699 |
Pig chromosome | chr10 |
Pig SNP position | 45538582 |
PubMed ID | 20708005 |
---|---|
Journal | Gastroenterology |
Link | www.ncbi.nlm.nih.gov/pubmed/20708005 |
Study | Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease. |
Disease/Trait | Non-alcoholic fatty liver disease histology (lobular) |
Initial sample | 236 European ancestry cases |
Replication sample | NA |
Region | 10p11.23 |
Chromosome id | chr10 |
Chromosome position | 29807699 |
Reported gene | intergenic |
Mapped gene | LOC105376475 - LOC105376476 |
Upstream gene id | 105376475 |
Downstream gene id | 105376476 |
SNP gene ids | |
Upstream gene distance | 23660 |
Downstream gene distance | 13615 |
SNP risk allele | rs2986971-G |
SNPs | rs2986971 |
Merged | 0 |
SNP id current | 2986971 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | 0.48 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 0.49 |
%95 Ci | [NR] unit increase |
Platform | Illumina [324623] |
CNV | N |
Mapped trait | non-alcoholic fatty liver disease, cirrhosis of liver |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003095, http://www.ebi.ac.uk/efo/EFO_0001422 |
Study accession | GCST000766 |