SNP Detail For rs2972219
1.Mapping Information
Human SNP ID rs2972219
Human chromosome chr5
Human SNP position 118647917
Pig chromosome chr2
Pig SNP position 127845837
2.Annotation Information
PubMed ID24529757
JournalNeurobiol Aging
Linkwww.ncbi.nlm.nih.gov/pubmed/24529757
StudyGenome-wide association study combining pathway analysis for typical sporadic amyotrophic lateral sclerosis in Chinese Han populations.
Disease/TraitAmyotrophic lateral sclerosis (sporadic)
Initial sample250 Han Chinese ancestry cases, 250 Han Chinese ancestry controls
Replication sampleNA
Region5q23.1
Chromosome idchr5
Chromosome position118647917
Reported geneLOC100287135
Mapped geneLOC102467225 - LOC105379142
Upstream gene id102467225
Downstream gene id105379142
SNP gene ids
Upstream gene distance19825
Downstream gene distance48992
SNP risk allelers2972219-?
SNPsrs2972219
Merged0
SNP id current2972219
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta
%95 Ci
PlatformIllumina [859311]
CNVN
Mapped traitsporadic amyotrophic lateral sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001357
Study accessionGCST002337