Human SNP ID | rs2969540 |
---|---|
Human chromosome | chr7 |
Human SNP position | 155109147 |
Pig chromosome | chr18 |
Pig SNP position | 3136065 |
PubMed ID | 24662972 |
---|---|
Journal | Carcinogenesis |
Link | www.ncbi.nlm.nih.gov/pubmed/24662972 |
Study | Genome-wide interaction study of smoking and bladder cancer risk. |
Disease/Trait | Bladder cancer (smoking interaction) |
Initial sample | 560 European ancestry never smoker cases, 2,442 European ancestry ever smoker cases, 1,406 European ancestry never smoker controls, 3,005 European ancestry ever smoker controls |
Replication sample | 494 European ancestry never smoker cases, 1,927 European ancestry ever smoker cases, 2,257 European ancestry never smoker controls, 3,490 European ancestry ever smoker controls |
Region | 7q36.2 |
Chromosome id | chr7 |
Chromosome position | 155109147 |
Reported gene | HTR5A, PAXIP1, INSIG1 |
Mapped gene | HTR5A - LOC105375584 |
Upstream gene id | 3361 |
Downstream gene id | 105375584 |
SNP gene ids | |
Upstream gene distance | 21755 |
Downstream gene distance | 60189 |
SNP risk allele | rs2969540-? |
SNPs | rs2969540 |
Merged | 0 |
SNP id current | 2969540 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | (multiplicative, retrospective analysis) |
Or beta | |
%95 Ci | |
Platform | Illumina [491011] |
CNV | N |
Mapped trait | bladder carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000292 |
Study accession | GCST002397 |