SNP Detail For rs2967605
1.Mapping Information
Human SNP ID rs2967605
Human chromosome chr19
Human SNP position 8404854
Pig chromosome chr2
Pig SNP position 71250668
2.Annotation Information
PubMed ID19060906
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19060906
StudyCommon variants at 30 loci contribute to polygenic dyslipidemia.
Disease/TraitHDL cholesterol
Initial sample19,840 European ancestry individuals
Replication sampleUp to 20,623 European ancestry individuals
Region19p13.2
Chromosome idchr19
Chromosome position8404854
Reported geneANGPTL4
Mapped geneRAB11B - MARCH2
Upstream gene id9230
Downstream gene id51257
SNP gene ids
Upstream gene distance420
Downstream gene distance8418
SNP risk allelers2967605-T
SNPsrs2967605
Merged0
SNP id current2967605
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.16
P value0.00000001
Pvalue mlog8
P value text
Or beta0.12
%95 Ci[0.04-0.20] s.d. decrease
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000290