Human SNP ID | rs2967605 |
---|---|
Human chromosome | chr19 |
Human SNP position | 8404854 |
Pig chromosome | chr2 |
Pig SNP position | 71250668 |
PubMed ID | 19060906 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19060906 |
Study | Common variants at 30 loci contribute to polygenic dyslipidemia. |
Disease/Trait | HDL cholesterol |
Initial sample | 19,840 European ancestry individuals |
Replication sample | Up to 20,623 European ancestry individuals |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 8404854 |
Reported gene | ANGPTL4 |
Mapped gene | RAB11B - MARCH2 |
Upstream gene id | 9230 |
Downstream gene id | 51257 |
SNP gene ids | |
Upstream gene distance | 420 |
Downstream gene distance | 8418 |
SNP risk allele | rs2967605-T |
SNPs | rs2967605 |
Merged | 0 |
SNP id current | 2967605 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.16 |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | |
Or beta | 0.12 |
%95 Ci | [0.04-0.20] s.d. decrease |
Platform | Affymetrix, Illumina [~ 2600000] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST000290 |