SNP Detail For rs2957128
1.Mapping Information
Human SNP ID rs2957128
Human chromosome chr18
Human SNP position 62393502
Pig chromosome chr1
Pig SNP position 176589155
2.Annotation Information
PubMed ID20436471
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20436471
StudyGenome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget__s disease of bone.
Disease/TraitPaget__s disease
Initial sample692 European ancestry cases, 1,001 European ancestry controls
Replication sample256 European ancestry cases, 488 European ancestry controls
Region18q21.33
Chromosome idchr18
Chromosome position62393502
Reported geneTNFRSF11A
Mapped geneTNFRSF11A - RPL17P44
Upstream gene id8792
Downstream gene id100129584
SNP gene ids
Upstream gene distance5792
Downstream gene distance22142
SNP risk allelers2957128-A
SNPsrs2957128
Merged0
SNP id current2957128
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.38
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta1.46
%95 Ci[1.30-1.63]
PlatformIllumina [294663]
CNVN
Mapped traitosteitis deformans
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004261
Study accessionGCST000672