Human SNP ID | rs2957128 |
---|---|
Human chromosome | chr18 |
Human SNP position | 62393502 |
Pig chromosome | chr1 |
Pig SNP position | 176589155 |
PubMed ID | 20436471 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20436471 |
Study | Genome-wide association study identifies variants at CSF1, OPTN and TNFRSF11A as genetic risk factors for Paget__s disease of bone. |
Disease/Trait | Paget__s disease |
Initial sample | 692 European ancestry cases, 1,001 European ancestry controls |
Replication sample | 256 European ancestry cases, 488 European ancestry controls |
Region | 18q21.33 |
Chromosome id | chr18 |
Chromosome position | 62393502 |
Reported gene | TNFRSF11A |
Mapped gene | TNFRSF11A - RPL17P44 |
Upstream gene id | 8792 |
Downstream gene id | 100129584 |
SNP gene ids | |
Upstream gene distance | 5792 |
Downstream gene distance | 22142 |
SNP risk allele | rs2957128-A |
SNPs | rs2957128 |
Merged | 0 |
SNP id current | 2957128 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.38 |
P value | 0.00000000002 |
Pvalue mlog | 10.698970004336 |
P value text | |
Or beta | 1.46 |
%95 Ci | [1.30-1.63] |
Platform | Illumina [294663] |
CNV | N |
Mapped trait | osteitis deformans |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004261 |
Study accession | GCST000672 |