SNP Detail For rs2929282
1.Mapping Information
Human SNP ID rs2929282
Human chromosome chr15
Human SNP position 43953733
Pig chromosome chr1
Pig SNP position 142238601
2.Annotation Information
PubMed ID20686565
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20686565
StudyBiological, clinical and population relevance of 95 loci for blood lipids.
Disease/TraitTriglycerides
Initial sample96,598 European ancestry individuals
Replication sampleNA
Region15q15.3
Chromosome idchr15
Chromosome position43953733
Reported geneFRMD5
Mapped geneFRMD5
Upstream gene id
Downstream gene id
SNP gene ids84978
Upstream gene distance
Downstream gene distance
SNP risk allelers2929282-T
SNPsrs2929282
Merged0
SNP id current2929282
Contextintron_variant
Intergenic0
Allele frequency0.05
P value0.00000000002
Pvalue mlog10.698970004336
P value text
Or beta5.13
%95 Ci[3.44-6.82] mg/dL increase
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST000758
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitTriglycerides
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region15q15.3
Chromosome idchr15
Chromosome position43953733
Reported geneFRMD5
Mapped geneFRMD5
Upstream gene id
Downstream gene id
SNP gene ids84978
Upstream gene distance
Downstream gene distance
SNP risk allelers2929282-T
SNPsrs2929282
Merged0
SNP id current2929282
Contextintron_variant
Intergenic0
Allele frequency0.07
P value0.000000002
Pvalue mlog8.69897000433601
P value text
Or beta0.072
%95 Ci[NR] mg/dL increase
PlatformNR [NR] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST002216