SNP Detail For rs2927438
1.Mapping Information
Human SNP ID rs2927438
Human chromosome chr19
Human SNP position 44738850
Pig chromosome chr6
Pig SNP position 47148454
2.Annotation Information
PubMed ID24121790
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24121790
StudyA genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus.
Disease/TraitDigestive system disease (Barrett__s esophagus and esophageal adenocarcinoma combined)
Initial sample3,928 European ancestry cases, 3,207 European ancestry controls
Replication sample1,636 European ancestry cases, 6,911 European ancestry controls
Region19q13.32
Chromosome idchr19
Chromosome position44738850
Reported geneNR
Mapped geneLOC105372416
Upstream gene id
Downstream gene id
SNP gene ids105372416
Upstream gene distance
Downstream gene distance
SNP risk allelers2927438-C
SNPsrs2927438
Merged0
SNP id current2927438
Contextintergenic_variant
Intergenic0
Allele frequency0.778
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.1628
%95 Ci[1.1-1.25]
PlatformIllumina [922031]
CNVN
Mapped traitesophageal adenocarcinoma, digestive system disease, Barrett__s esophagus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000478, http://www.ebi.ac.uk/efo/EFO_0000405, http://www.ebi.ac.uk/efo/EFO_0000280
Study accessionGCST002231