Human SNP ID | rs2927438 |
---|---|
Human chromosome | chr19 |
Human SNP position | 44738850 |
Pig chromosome | chr6 |
Pig SNP position | 47148454 |
PubMed ID | 24121790 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24121790 |
Study | A genome-wide association study identifies new susceptibility loci for esophageal adenocarcinoma and Barrett__s esophagus. |
Disease/Trait | Digestive system disease (Barrett__s esophagus and esophageal adenocarcinoma combined) |
Initial sample | 3,928 European ancestry cases, 3,207 European ancestry controls |
Replication sample | 1,636 European ancestry cases, 6,911 European ancestry controls |
Region | 19q13.32 |
Chromosome id | chr19 |
Chromosome position | 44738850 |
Reported gene | NR |
Mapped gene | LOC105372416 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105372416 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2927438-C |
SNPs | rs2927438 |
Merged | 0 |
SNP id current | 2927438 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | 0.778 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.1628 |
%95 Ci | [1.1-1.25] |
Platform | Illumina [922031] |
CNV | N |
Mapped trait | esophageal adenocarcinoma, digestive system disease, Barrett__s esophagus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000478, http://www.ebi.ac.uk/efo/EFO_0000405, http://www.ebi.ac.uk/efo/EFO_0000280 |
Study accession | GCST002231 |