SNP Detail For rs2923084
1.Mapping Information
Human SNP ID rs2923084
Human chromosome chr11
Human SNP position 10367235
Pig chromosome chr2
Pig SNP position 52511110
2.Annotation Information
PubMed ID20686565
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/20686565
StudyBiological, clinical and population relevance of 95 loci for blood lipids.
Disease/TraitHDL cholesterol
Initial sample99,900 European ancestry individuals
Replication sampleNA
Region11p15.4
Chromosome idchr11
Chromosome position10367235
Reported geneAMPD3, ADM
Mapped geneCAND1.11
Upstream gene id
Downstream gene id
SNP gene ids100130460
Upstream gene distance
Downstream gene distance
SNP risk allelers2923084-G
SNPsrs2923084
Merged0
SNP id current2923084
Contextintron_variant
Intergenic0
Allele frequency0.17
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta0.41
%95 Ci[0.21-0.61] mg/dL decrease
PlatformAffymetrix, Illumina, Perlegen [~ 2600000] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST000755
PubMed ID24097068
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24097068
StudyDiscovery and refinement of loci associated with lipid levels.
Disease/TraitHDL cholesterol
Initial sample94,595 European ancestry individuals
Replication sample93,982 European ancestry individuals
Region11p15.4
Chromosome idchr11
Chromosome position10367235
Reported geneAMPD3
Mapped geneCAND1.11
Upstream gene id
Downstream gene id
SNP gene ids100130460
Upstream gene distance
Downstream gene distance
SNP risk allelers2923084-G
SNPsrs2923084
Merged0
SNP id current2923084
Contextintron_variant
Intergenic0
Allele frequency0.18
P value0.00000005
Pvalue mlog7.30102999566398
P value text
Or beta0.026
%95 Ci[NR] unit decrease
PlatformNR [NR] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002223