Human SNP ID | rs2912774 |
---|---|
Human chromosome | chr10 |
Human SNP position | 121589148 |
Pig chromosome | chr14 |
Pig SNP position | 142561193 |
PubMed ID | 24493630 |
---|---|
Journal | Cancer Epidemiol Biomarkers Prev |
Link | www.ncbi.nlm.nih.gov/pubmed/24493630 |
Study | A genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age. |
Disease/Trait | Breast cancer (early onset) |
Initial sample | 3,523 European ancestry young female cases, 2,702 European ancestry young female controls |
Replication sample | 3,470 European ancestry young female cases, 5,475 European ancestry young female controls |
Region | 10q26.13 |
Chromosome id | chr10 |
Chromosome position | 121589148 |
Reported gene | FGFR2 |
Mapped gene | FGFR2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2263 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2912774-? |
SNPs | rs2912774 |
Merged | 0 |
SNP id current | 2912774 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.44 |
P value | 3E-27 |
Pvalue mlog | 26.5228787452803 |
P value text | |
Or beta | 1.29 |
%95 Ci | [1.23-1.35] |
Platform | Illumina [1265548] (imputed) |
CNV | N |
Mapped trait | breast carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000305 |
Study accession | GCST002346 |