SNP Detail For rs2912774
1.Mapping Information
Human SNP ID rs2912774
Human chromosome chr10
Human SNP position 121589148
Pig chromosome chr14
Pig SNP position 142561193
2.Annotation Information
PubMed ID24493630
JournalCancer Epidemiol Biomarkers Prev
Linkwww.ncbi.nlm.nih.gov/pubmed/24493630
StudyA genome-wide association study of early-onset breast cancer identifies PFKM as a novel breast cancer gene and supports a common genetic spectrum for breast cancer at any age.
Disease/TraitBreast cancer (early onset)
Initial sample3,523 European ancestry young female cases, 2,702 European ancestry young female controls
Replication sample3,470 European ancestry young female cases, 5,475 European ancestry young female controls
Region10q26.13
Chromosome idchr10
Chromosome position121589148
Reported geneFGFR2
Mapped geneFGFR2
Upstream gene id
Downstream gene id
SNP gene ids2263
Upstream gene distance
Downstream gene distance
SNP risk allelers2912774-?
SNPsrs2912774
Merged0
SNP id current2912774
Contextintron_variant
Intergenic0
Allele frequency0.44
P value3E-27
Pvalue mlog26.5228787452803
P value text
Or beta1.29
%95 Ci[1.23-1.35]
PlatformIllumina [1265548] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST002346