SNP Detail For rs290986
1.Mapping Information
Human SNP ID rs290986
Human chromosome chr9
Human SNP position 90801254
Pig chromosome chr14
Pig SNP position 2765937
2.Annotation Information
PubMed ID21833088
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/21833088
StudyGenetic risk and a primary role for cell-mediated immune mechanisms in multiple sclerosis.
Disease/TraitMultiple sclerosis
Initial sample9,772 European ancestry cases, 16,849 European ancestry controls
Replication sample4,218 European ancestry cases, 7,296 European ancestry controls
Region9q22.2
Chromosome idchr9
Chromosome position90801254
Reported geneSYK
Mapped geneOR7E108P - SYK
Upstream gene id81363
Downstream gene id6850
SNP gene ids
Upstream gene distance49014
Downstream gene distance426
SNP risk allelers290986-A
SNPsrs290986
Merged0
SNP id current290986
Contextupstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.0000009
Pvalue mlog6.04575749056067
P value text
Or beta1.1
%95 Ci[1.08-1.12]
PlatformIllumina [465434]
CNVN
Mapped traitmultiple sclerosis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003885
Study accessionGCST001198