SNP Detail For rs2908197
1.Mapping Information
Human SNP ID rs2908197
Human chromosome chr7
Human SNP position 76307732
Pig chromosome chr3
Pig SNP position 9921609
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region7q11.23
Chromosome idchr7
Chromosome position76307732
Reported geneNR
Mapped geneHSPB1 - YWHAG
Upstream gene id3315
Downstream gene id7532
SNP gene ids
Upstream gene distance3435
Downstream gene distance19059
SNP risk allelers2908197-?
SNPsrs2908197
Merged
SNP id current2908197
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.1227
%95 Ci[NR] unit increase
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956