Human SNP ID | rs2908197 |
---|---|
Human chromosome | chr7 |
Human SNP position | 76307732 |
Pig chromosome | chr3 |
Pig SNP position | 9921609 |
PubMed ID | 26053186 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/26053186 |
Study | Mercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer. |
Disease/Trait | 3-hydroxypropylmercapturic acid levels in smokers |
Initial sample | 362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals |
Replication sample | NA |
Region | 7q11.23 |
Chromosome id | chr7 |
Chromosome position | 76307732 |
Reported gene | NR |
Mapped gene | HSPB1 - YWHAG |
Upstream gene id | 3315 |
Downstream gene id | 7532 |
SNP gene ids | |
Upstream gene distance | 3435 |
Downstream gene distance | 19059 |
SNP risk allele | rs2908197-? |
SNPs | rs2908197 |
Merged | |
SNP id current | 2908197 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.1227 |
%95 Ci | [NR] unit increase |
Platform | Illumina [up to 11892802] (imputed) |
CNV | N |
Mapped trait | smoking behavior, 3-hydroxypropylmercapturic acid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014 |
Study accession | GCST002956 |