SNP Detail For rs2904297
1.Mapping Information
Human SNP ID rs2904297
Human chromosome chr4
Human SNP position 11038666
Pig chromosome chr8
Pig SNP position 6480247
2.Annotation Information
PubMed ID25429627
JournalJ Clin Endocrinol Metab
Linkwww.ncbi.nlm.nih.gov/pubmed/25429627
StudyIdentification of a Hashimoto thyroiditis susceptibility locus via a genome-wide comparison with Graves__ disease.
Disease/TraitHashimoto thyroiditis versus Graves__ disease
Initial sample263 Japanese ancestry Hashimoto thyroiditis cases, 260 Japanese ancestry Graves鈥?disease cases
Replication sample181 Japanese ancestry Hashimoto thyroiditis cases, 286 Japanese ancestry Graves鈥?disease cases
Region4p16.1
Chromosome idchr4
Chromosome position11038666
Reported geneintergenic
Mapped geneLOC102723525 - LOC105374488
Upstream gene id102723525
Downstream gene id105374488
SNP gene ids
Upstream gene distance229747
Downstream gene distance221134
SNP risk allelers2904297-?
SNPsrs2904297
Merged0
SNP id current2904297
Contextintergenic_variant
Intergenic1
Allele frequency0.763
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.72
%95 Ci[1.37-2.22]
PlatformIllumina [546173]
CNVN
Mapped traitautoimmune thyroid disease, Hashimoto__s thyroiditis, Graves disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006812, http://www.ebi.ac.uk/efo/EFO_0003779, http://www.ebi.ac.uk/efo/EFO_0004237
Study accessionGCST002705