Human SNP ID | rs2904297 |
---|---|
Human chromosome | chr4 |
Human SNP position | 11038666 |
Pig chromosome | chr8 |
Pig SNP position | 6480247 |
PubMed ID | 25429627 |
---|---|
Journal | J Clin Endocrinol Metab |
Link | www.ncbi.nlm.nih.gov/pubmed/25429627 |
Study | Identification of a Hashimoto thyroiditis susceptibility locus via a genome-wide comparison with Graves__ disease. |
Disease/Trait | Hashimoto thyroiditis versus Graves__ disease |
Initial sample | 263 Japanese ancestry Hashimoto thyroiditis cases, 260 Japanese ancestry Graves鈥?disease cases |
Replication sample | 181 Japanese ancestry Hashimoto thyroiditis cases, 286 Japanese ancestry Graves鈥?disease cases |
Region | 4p16.1 |
Chromosome id | chr4 |
Chromosome position | 11038666 |
Reported gene | intergenic |
Mapped gene | LOC102723525 - LOC105374488 |
Upstream gene id | 102723525 |
Downstream gene id | 105374488 |
SNP gene ids | |
Upstream gene distance | 229747 |
Downstream gene distance | 221134 |
SNP risk allele | rs2904297-? |
SNPs | rs2904297 |
Merged | 0 |
SNP id current | 2904297 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.763 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.72 |
%95 Ci | [1.37-2.22] |
Platform | Illumina [546173] |
CNV | N |
Mapped trait | autoimmune thyroid disease, Hashimoto__s thyroiditis, Graves disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006812, http://www.ebi.ac.uk/efo/EFO_0003779, http://www.ebi.ac.uk/efo/EFO_0004237 |
Study accession | GCST002705 |