SNP Detail For rs2898681
1.Mapping Information
Human SNP ID rs2898681
Human chromosome chr4
Human SNP position 52890833
Pig chromosome chr8
Pig SNP position 41863031
2.Annotation Information
PubMed ID20395239
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20395239
StudyGenome-wide association identifies ATOH7 as a major gene determining human optic disc size.
Disease/TraitOptic nerve measurement (cup area)
Initial sample1,368 European ancestry twins from 666 families
Replication sample848 European ancestry twins from 531 families
Region4q12
Chromosome idchr4
Chromosome position52890833
Reported geneSCFD2
Mapped geneSCFD2
Upstream gene id
Downstream gene id
SNP gene ids152579
Upstream gene distance
Downstream gene distance
SNP risk allelers2898681-G
SNPsrs2898681
Merged0
SNP id current2898681
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.173
%95 Ci[0.069-0.277] unit increase
PlatformIllumina [~ 2740000] (imputed)
CNVN
Mapped traitoptic disc size measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004832
Study accessionGCST000659