SNP Detail For rs2891316
1.Mapping Information
Human SNP ID rs2891316
Human chromosome chr9
Human SNP position 28587996
Pig chromosome chr1
Pig SNP position 263322291
2.Annotation Information
PubMed ID24096698
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24096698
StudyGenome-wide association study of endometrial cancer in E2C2.
Disease/TraitEndometrial cancer
Initial sampleup to 2,695 European ancestry cases, up to 2,777 European ancestry controls
Replication sampleup to 3,235 cases, up to 12,059 controls
Region9p21.1
Chromosome idchr9
Chromosome position28587996
Reported geneLINGO2
Mapped geneLOC105376004, LINGO2
Upstream gene id
Downstream gene id
SNP gene ids105376004, 158038
Upstream gene distance
Downstream gene distance
SNP risk allelers2891316-?
SNPsrs2891316
Merged0
SNP id current2891316
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text(European, All type I)
Or beta
%95 Ci
PlatformIllumina [873935]
CNVN
Mapped traitendometrial neoplasm
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004230
Study accessionGCST002218