SNP Detail For rs2887571
1.Mapping Information
Human SNP ID rs2887571
Human chromosome chr12
Human SNP position 1529005
Pig chromosome chr5
Pig SNP position 70891157
2.Annotation Information
PubMed ID22504420
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22504420
StudyGenome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
Disease/TraitBone mineral density
Initial sampleUp to 32,961 European and East Asian ancestry individuals
Replication sampleUp to 50,933 European and East Asian ancestry individuals
Region12p13.33
Chromosome idchr12
Chromosome position1529005
Reported geneERC1
Mapped geneLINC00942 - WNT5B
Upstream gene id100292680
Downstream gene id81029
SNP gene ids
Upstream gene distance24581
Downstream gene distance886
SNP risk allelers2887571-A
SNPsrs2887571
Merged0
SNP id current2887571
Contextupstream_gene_variant
Intergenic1
Allele frequency0.76
P value0.000000000006
Pvalue mlog11.2218487496163
P value text(LSBMD)
Or beta0.04
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitbone density
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003923
Study accessionGCST001482