Human SNP ID | rs28777 |
---|---|
Human chromosome | chr5 |
Human SNP position | 33958854 |
Pig chromosome | chr16 |
Pig SNP position | 20730570 |
PubMed ID | 18483556 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18483556 |
Study | A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation. |
Disease/Trait | Black vs. blond hair color |
Initial sample | 2,287 European ancestry female individuals |
Replication sample | 8,465 European ancestry individuals |
Region | 5p13.2 |
Chromosome id | chr5 |
Chromosome position | 33958854 |
Reported gene | MATP |
Mapped gene | SLC45A2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51151 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs28777-C |
SNPs | rs28777 |
Merged | 0 |
SNP id current | 28777 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000000000000001 |
Pvalue mlog | 17 |
P value text | |
Or beta | 0.46 |
%95 Ci | [0.36-0.56] hair color score decrease |
Platform | Illumina [528173] |
CNV | N |
Mapped trait | hair color |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003924 |
Study accession | GCST000190 |
PubMed ID | 18483556 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18483556 |
Study | A genome-wide association study identifies novel alleles associated with hair color and skin pigmentation. |
Disease/Trait | Black vs. red hair color |
Initial sample | 2,287 European ancestry female individuals |
Replication sample | 8,465 European ancestry individuals |
Region | 5p13.2 |
Chromosome id | chr5 |
Chromosome position | 33958854 |
Reported gene | MATP |
Mapped gene | SLC45A2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 51151 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs28777-C |
SNPs | rs28777 |
Merged | 0 |
SNP id current | 28777 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000000000009 |
Pvalue mlog | 13.0457574905606 |
P value text | |
Or beta | 0.46 |
%95 Ci | [0.34-0.58] hair color score decrease |
Platform | Illumina [528173] |
CNV | N |
Mapped trait | hair color |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003924 |
Study accession | GCST000191 |