SNP Detail For rs28777
1.Mapping Information
Human SNP ID rs28777
Human chromosome chr5
Human SNP position 33958854
Pig chromosome chr16
Pig SNP position 20730570
2.Annotation Information
PubMed ID18483556
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18483556
StudyA genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.
Disease/TraitBlack vs. blond hair color
Initial sample2,287 European ancestry female individuals
Replication sample8,465 European ancestry individuals
Region5p13.2
Chromosome idchr5
Chromosome position33958854
Reported geneMATP
Mapped geneSLC45A2
Upstream gene id
Downstream gene id
SNP gene ids51151
Upstream gene distance
Downstream gene distance
SNP risk allelers28777-C
SNPsrs28777
Merged0
SNP id current28777
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000000000001
Pvalue mlog17
P value text
Or beta0.46
%95 Ci[0.36-0.56] hair color score decrease
PlatformIllumina [528173]
CNVN
Mapped traithair color
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003924
Study accessionGCST000190
PubMed ID18483556
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/18483556
StudyA genome-wide association study identifies novel alleles associated with hair color and skin pigmentation.
Disease/TraitBlack vs. red hair color
Initial sample2,287 European ancestry female individuals
Replication sample8,465 European ancestry individuals
Region5p13.2
Chromosome idchr5
Chromosome position33958854
Reported geneMATP
Mapped geneSLC45A2
Upstream gene id
Downstream gene id
SNP gene ids51151
Upstream gene distance
Downstream gene distance
SNP risk allelers28777-C
SNPsrs28777
Merged0
SNP id current28777
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000000009
Pvalue mlog13.0457574905606
P value text
Or beta0.46
%95 Ci[0.34-0.58] hair color score decrease
PlatformIllumina [528173]
CNVN
Mapped traithair color
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003924
Study accessionGCST000191