SNP Detail For rs28727938
1.Mapping Information
Human SNP ID rs28727938
Human chromosome chr8
Human SNP position 76566304
Pig chromosome chr4
Pig SNP position 65190966
2.Annotation Information
PubMed ID25855136
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25855136
StudyNew basal cell carcinoma susceptibility loci.
Disease/TraitBasal cell carcinoma
Initial sample4,572 European ancestry cases, 266,358 European ancestry controls
Replication sampleup to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls
Region8q21.13
Chromosome idchr8
Chromosome position76566304
Reported geneZFHX4, ZFHX4-AS1
Mapped geneLINC01111 - MRPL9P1
Upstream gene id101926978
Downstream gene id137290
SNP gene ids
Upstream gene distance41948
Downstream gene distance36523
SNP risk allelers28727938-C
SNPsrs28727938
Merged0
SNP id current28727938
Contextintron_variant
Intergenic1
Allele frequency0.938
P value0.000000000004
Pvalue mlog11.397940008672
P value text
Or beta1.43
%95 Ci[1.30-1.59]
PlatformIllumina [24988228] (imputed)
CNVN
Mapped traitbasal cell carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004193
Study accessionGCST002842