Human SNP ID | rs28727938 |
---|---|
Human chromosome | chr8 |
Human SNP position | 76566304 |
Pig chromosome | chr4 |
Pig SNP position | 65190966 |
PubMed ID | 25855136 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25855136 |
Study | New basal cell carcinoma susceptibility loci. |
Disease/Trait | Basal cell carcinoma |
Initial sample | 4,572 European ancestry cases, 266,358 European ancestry controls |
Replication sample | up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls |
Region | 8q21.13 |
Chromosome id | chr8 |
Chromosome position | 76566304 |
Reported gene | ZFHX4, ZFHX4-AS1 |
Mapped gene | LINC01111 - MRPL9P1 |
Upstream gene id | 101926978 |
Downstream gene id | 137290 |
SNP gene ids | |
Upstream gene distance | 41948 |
Downstream gene distance | 36523 |
SNP risk allele | rs28727938-C |
SNPs | rs28727938 |
Merged | 0 |
SNP id current | 28727938 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | 0.938 |
P value | 0.000000000004 |
Pvalue mlog | 11.397940008672 |
P value text | |
Or beta | 1.43 |
%95 Ci | [1.30-1.59] |
Platform | Illumina [24988228] (imputed) |
CNV | N |
Mapped trait | basal cell carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004193 |
Study accession | GCST002842 |