SNP Detail For rs2862035
1.Mapping Information
Human SNP ID rs2862035
Human chromosome chr11
Human SNP position 41203883
Pig chromosome chr2
Pig SNP position 22536235
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region11p12
Chromosome idchr11
Chromosome position41203883
Reported geneNR
Mapped geneLRRC4C
Upstream gene id
Downstream gene id
SNP gene ids57689
Upstream gene distance
Downstream gene distance
SNP risk allelers2862035-C
SNPsrs2862035
Merged0
SNP id current2862035
Contextintron_variant
Intergenic0
Allele frequency0.0246322445734703
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP18)
Or beta0.4382
%95 Ci[0.25-0.63] unit decrease
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848