Human SNP ID | rs2858829 |
---|---|
Human chromosome | chr6 |
Human SNP position | 116447754 |
Pig chromosome | chr1 |
Pig SNP position | 92310724 |
PubMed ID | 25082827 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25082827 |
Study | A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis. |
Disease/Trait | Ulcerative colitis |
Initial sample | up to 7,483 European ancestry cases, up to 21,211 European ancestry controls |
Replication sample | 1,073 European ancestry cases, 1,279 European ancestry controls |
Region | 6q22.1 |
Chromosome id | chr6 |
Chromosome position | 116447754 |
Reported gene | FAM26F |
Mapped gene | DSE - KRT18P22 |
Upstream gene id | 29940 |
Downstream gene id | 442252 |
SNP gene ids | |
Upstream gene distance | 4279 |
Downstream gene distance | 9506 |
SNP risk allele | rs2858829-? |
SNPs | rs2858829 |
Merged | 0 |
SNP id current | 2858829 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000008 |
Pvalue mlog | 9.09691001300805 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.08-1.16] |
Platform | Illumina [546271] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST002548 |