SNP Detail For rs2858829
1.Mapping Information
Human SNP ID rs2858829
Human chromosome chr6
Human SNP position 116447754
Pig chromosome chr1
Pig SNP position 92310724
2.Annotation Information
PubMed ID25082827
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25082827
StudyA genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.
Disease/TraitUlcerative colitis
Initial sampleup to 7,483 European ancestry cases, up to 21,211 European ancestry controls
Replication sample1,073 European ancestry cases, 1,279 European ancestry controls
Region6q22.1
Chromosome idchr6
Chromosome position116447754
Reported geneFAM26F
Mapped geneDSE - KRT18P22
Upstream gene id29940
Downstream gene id442252
SNP gene ids
Upstream gene distance4279
Downstream gene distance9506
SNP risk allelers2858829-?
SNPsrs2858829
Merged0
SNP id current2858829
Contextdownstream_gene_variant
Intergenic1
Allele frequencyNR
P value0.0000000008
Pvalue mlog9.09691001300805
P value text
Or beta1.12
%95 Ci[1.08-1.16]
PlatformIllumina [546271]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST002548